Dice the tomatoes into small cubes. Seed the jalapeño peppers and finely chop them.
Peel the red onion, garlic, and ginger, then finely chop them.
In a medium saucepan over medium heat, heat the apple cider vinegar and brown sugar, stirring until the sugar dissolves.
Add the chopped onion, garlic, and ginger, and sauté for 2-3 minutes, until fragrant.
Stir in the smoked paprika and chopped jalapeño peppers, then mix thoroughly.
Add the diced tomatoes, then cook over low heat for 20-25 minutes, allowing the flavors to meld and the chutney to thicken.
Pour in the freshly squeezed lime juice and grated lime zest, then stir well.
Season with salt and freshly ground black pepper, then cook for an additional 2 minutes.
Let it cool slightly, then serve with grilled meats, cheeses, or roasted vegetables.
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