Preheat oven to 350°F (180°C). Line a muffin tin with paper liners.
In a medium bowl, whisk together the flour, baking powder, and salt.
In a large bowl, cream together the softened butter and granulated sugar until light and fluffy.
Beat in the eggs one at a time, mixing well after each addition.
Stir in the vanilla extract and pomegranate juice. Gradually add the dry ingredients to the wet ingredients, alternating with the milk, beginning and ending with the dry ingredients.
Gently fold in the pomegranate seeds until evenly distributed in the batter.
Fill the muffin liners about three-quarters full. Bake for 18-20 minutes, or until a wooden skewer inserted into the center comes out clean.
Transfer the cupcakes to a wire rack to cool completely before frosting.
For the frosting, whip the heavy cream until stiff peaks form. Add the mascarpone cheese and powdered sugar, and continue to beat until smooth and creamy.
Using a piping bag, decorate the cupcakes with the frosting and garnish with fresh pomegranate seeds.
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