Thoroughly rinse the watermelon seeds and pat them dry with a clean kitchen towel.
In a medium saucepan, combine the water, vinegar, salt, and sugar. Bring to a boil, stirring until the ingredients are fully dissolved.
Peel and halve the garlic cloves. Place the bay leaves, mustard seeds, black peppercorns, dill seeds, and red pepper flakes at the bottom of a sterilized jar.
Fill the jar with the prepared watermelon seeds, layering them with the spices and garlic.
Pour the hot pickling brine over the seeds, ensuring they are completely submerged.
Let the jar cool to room temperature, then refrigerate for at least 24 hours to allow the flavors to meld.
Your spicy pickled watermelon seeds are ready! Use them in salads, sandwiches, or enjoy as a snack.
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