Preheat your oven to 350°F (180°C) and line a baking sheet with parchment paper.
In a bowl, combine the whole wheat flour, almond flour, and tapioca flour.
Add the butter and rub it into the flour mixture until it resembles coarse crumbs.
In another bowl, whisk together the milk, honey, eggs, and yeast. Let it stand for 5 minutes to activate the yeast.
Combine the dry and wet ingredients and mix until a soft dough forms.
Roll out the dough to about 1/8 inch (3 mm) thickness, then cut it into equal-sized triangles.
Place a small amount of chopped dark chocolate on the wider end of each triangle, then roll them up into croissant shapes.
Place the croissants on the prepared baking sheet and let them proof for 20 minutes.
Bake the croissants for 15-18 minutes, or until golden brown and crispy.
Once cooled, dust with a little almond flour before serving.
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